MEGARes: an antimicrobial resistance database for high throughput sequencing
MEGARes: an antimicrobial resistance database for high throughput sequencing. Nucleic Acids Research. 2017 Jan 4;45(D1):D574-D580 doi: 10.1093/nar/gkw1009. Epub 2016. Lakin, Steven*; Dean, Chris*; Noyes, Noelle*; Dettenwanger, Adam; Ross, Annie; Doster, Enrique; Rovira, Pablo; Abdo, Zaid; Jones, Kenneth; Ruiz, Jaime; Belk, Keith; Morley, Paul; Boucher, Christina. *: these authors contributed equally to this work

Use of metagenomic shotgun sequencing technology to detect foodborne pathogens within their microbiome in beef production chain
Xiang Yang, Noelle R. Noyes, Enrique Doster, Jennifer N. Martin, Lyndsey M. Linke, Roberta J. Magnuson, Hua Yang, Ifigenia Geornaras, Dale Woerner, Kenneth L. Jones, Jaime Ruiz, Christina Boucher, Paul S. Morley, and Keith E. Belk. Use of metagenomic shotgun sequencing technology to detect foodborne pathogens within their microbiome in beef production chain. Appl. Environ. Microbiol. AEM.00078-16; Accepted manuscript posted online 12 February 2016, doi:10.1128/AEM.00078-16

On the Hardness of Counting and Sampling Center Strings.
Christina Boucher and Mohamed Omar. "On the Hardness of Counting and Sampling Center Strings," IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.9, no.6, pp.1843,1846, Nov.-Dec. 2012. Conference version in the proceedings of the 17th Annual Symposium on String Processing and Information Retrieval (SPIRE 2010), pages 128--135.

Resistome diversity in cattle and the environment decreases during beef production
Noelle R Noyes, Xiang Yang, Lyndsey M. Linke, Roberta J. Magnuson, Adam Dettenwanger, Shaun Cook, Ifigenia Geornaras, Dale R. Woerner , Sheryl P. Gow, Tim A. McAllister, Hua Yang, Jaime Ruiz, Kenneth L. Jones, Christina A. Boucher, Paul S. Morley, Keith E. Belk. 2016. Resistome diversity in cattle and the environment decreases during beef production. eLife 2016;5:e13195

Exploring Non-touchscreen Gestures for Smartwatches
Shaikh Shawon Arefin Shimon, Courtney Lutton, Zichun Xu, Sarah Morrison-Smith, Christina Boucher, and Jaime Ruiz. 2016. Exploring Non-touchscreen Gestures for Smartwatches. In Proceedings of the 2016 CHI Conference on Human Factors in Computing Systems (CHI '16). ACM, New York, NY, USA, 3822-3833. DOI: http://dx.doi.org/10.1145/2858036.2858385

Opportunities for Supporting Large-Scale Collaborative Projects
Morrison-Smith, S., Boucher, C., Wang, I., and Ruiz, J. 2016. Opportunities for Supporting Large-Scale Collaborative Projects. In Proceedings of Computer-Supported Cooperative Work and Social Computing (CSCW '16): Workshop on Large-scale Collaborative Projects to Affect Societal Change.

Consensus Patterns (Probably) Has no EPTAS
Christina Boucher, Christine Lo, and Daniel Lokshtanov. Consensus Patterns (Probably) Has no EPTAS. To appear in the proceedings of the European Symposium on Algorithms (ESA 2015). Awarded best paper at ESA 2015.

Variable-Order de Bruijn Graphs
Christina Boucher, Alex Bowe, Travis Gagie, Simon J. Puglisi and Kunihiko Sadakane. Variable-Order de Bruijn Graphs. To appear in proceedings of DCC 2015

On Approximating String Selection Problems with Outliers.
Christina Boucher, Gadi Landau, Avivit Levy, David Pritchard, and Oren Weimann. On Approximating String Selection Problems with Outliers. In proceedings of the 23rd Annual Combinatorial Pattern Matching (CPM 2012), pages 427--438.

Smoothed Analysis of the Closest String Problem.
Christina Boucher and Kathleen Wilkie. Smoothed Analysis of the Closest String Problem. In proceedings of the 17th Annual Symposium on String Processing and Information Retrieval (SPIRE 2010), pages 107--118.

On the Structure of Small Motif Recognition Instances
Christina Boucher, Daniel Brown and Stephane Durocher. On the structure of small motif recognition instances. In proceedings of the 15th Annual String Processing and Information Retrieval Symposium (SPIRE 2008), pages 269--281.

A Graphical Game Model of Drug Binding
Christina Boucher and Maja Omanovic. A graphical game model of drug binding. In proceedings of the International Conference on Artificial Intelligence (ICAI 2007), pages 621--627.