Recent Lab News
01.06.2019 Martin Muggli will present Succinct De Bruijn Graph Construction for Massive Populations Through Space-Efficient Merging at ISMB/ECCB 2019.
01.06.2019 Christina gave a talk on how BWT can be used to build and represent the colored de Bruijn graph at the Dagstuhl Seminar called 25 Years of the Burrows-Wheeler Transform. Thank you to all the organizers.
01.06.2019 Five new journal articles and 3 new conference papers from Boucher lab. Will be posted soon.
01.09.2018 StringBio 2018 will be held in Orlando, Florida October 25 -- 27th. We are inviting students to submit abstracts to be considered for 15-20 minute oral presentations. Registration deadline: October 1, 2018 (NO registration fee)
20.06.2018 Christina and Vikas Bansal will be the PC Chair for RECOMB SEQ 2019.
20.06.2018 Practical Dynamic de Bruijn Graphs accepted to Journal of Bioinformatics. Alan and Victoria's code is found on GitHub.
11.06.2018 A succinct solution to Rmap alignment accepted to WABI 2018. Martin's code is found on GitHub. BioRxiv paper to be posted soon.
11.06.2018 Prefix-Free Parsing for Building Big BWTs accepted to WABI 2018. BioRxiv has a preliminary version.
01.05.2018 Third Generation Sequencing Data Analytics on Mobile Devices: an Out-of-Core Approach accepted to FNC 2018.
01.05.2018 Correction of Optical Mapping Data published in GigaScience. Code avaliable on github.
01.05.2018 Alan Kuhnle presented Practical Dynamic de Bruijn graphs at DSB 2018 in Helsinki.
01.03.2018 Christina is the PC Chair for ACM BCB 2018. Please contact her if you would like to join the PC.
01.03.2018 Resistome SNP Calling via Read Colored de Bruijn Graphs accepted to RECOMB SEQ 2018. Congratulations Bahar!
01.03.2018 Christina is the Poster Chair for RECOMB 2018. Please contact her concerning any matters.
01.03.2018 Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing published at Microbiome.
31.07.2017 Disentangled Long-Read De Bruijn Graphs via Optical Maps accepted to WABI 2017. Congratulations Bahar!
31.07.2017 Succinct Colored de Bruijn Graphs. Published at the Journal of Bioinformatics. Congratulations Martin!
31.07.2017 Targeted enrichment for pathogen detection and characterization in three felid species. Published at the Journal of Clinical Microbiology.
01.01.2017 MEGARes: an antimicrobial resistance database for high throughput sequencing published at Nucleic Acids Research.
01.08.2016 Christina Boucher is a keynote spearker for the Computational Pan-genomics ECCB 2016 workshop.
06.08.2016 "Colored de Bruijn Graphs" accepted for Late Breaking Research Presentation at ISMB 2016.
01.08.2016 Christina Boucher is a keynote spearker for RECOMB-seq 2016.
06.17.2015 "Consensus Patterns (Probably) Has no EPTAS" accepted to ESA 2015 [26% acceptance rate].
03.01.2015 "The SLOW GROWTH 3 pentatricopeptide repeat protein is required for the splicing of mitochondrial nad7 intron 2 in Arabidopsis" accepted to Plant Physiology.
02.14.2015 "Misassembly Detection using Paired-End Sequence Reads and Optical Mapping data" by Martin Muggli, Simon Puglisi, Roy Ronen, and Christina Boucher accepted to ISMB 2015 in first round of acceptance (9% acceptance on first round). Described on Homolog.us here.